Welcome to
SEQ Mapper
- A DNA sequence searching tool for massively parallel sequencing data
The development of massively parallel sequencing (MPS) has increased greatly the
scale of DNA sequencing. The analysis of massive data-files from single MPS analysis
can be a major challenge if examining the data for potential polymorphic loci. To
aid in the analysis of both short tandem repeat (STR) and single nucleotide polymorphisms
(SNP),
SEQ Mapper
is designed to search for allelic polymorphisms within a large number of reads generated
by MPS. Detecting and recording the polymorphic nature of each STR loci was performed
using four levels of search criteria: the entire STR locus spanning the two primers;
the STR region plus the two primer sequences; the STR region only; and the two primers
only.
How to Cite
SEQ Mapper
SEQ Mapper: A DNA sequence searching tool for massively parallel
sequencing data
James Chun-I Lee
1, Bill Tseng
1, Liang-Kai Chang
2,
Adrian Linacre
3
Forensic Sci Int Genet. 2016;26:66-69.
1Department of Forensic Medicine, College of Medicine, National Taiwan
University, No.1 Jen-Ai Road Section 1, Taipei 10051, Taiwan, ROC
2Laboratory of Cancer Genomic Medicine, LIHPAO Life Science. CO., Ltd.,
8F Med Sci & Tech Bldg, No 201, Sec 2 Shipai Rd, Taipei 11217, Taiwan, ROC
3School of Biological Sciences, Flinders University, Adelaide 5001, Australia